J3_6D90_033

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6D90_033 not in the Motif Atlas

Homologous match to J3_8P9A_080

Geometric discrepancy: 0.3797

The information below is about J3_8P9A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_99563.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6D90|1|2|U|1340
6D90|1|2|C|1341
6D90|1|2|U|1342
6D90|1|2|U|1343
6D90|1|2|A|1344
6D90|1|2|G|1345
*
6D90|1|2|C|1384
6D90|1|2|G|1385
6D90|1|2|A|1386
6D90|1|2|G|1387
6D90|1|2|A|1388
6D90|1|2|C|1389
*
6D90|1|2|G|1481
6D90|1|2|C|1482
6D90|1|2|A|1483
6D90|1|2|A|1484
6D90|1|2|U|1485
6D90|1|2|A|1486

Current chains

Chain 2

18S rRNA

Nearby chains

Chain DD

uS5

Chain EE

uS3

Chain RR

uS9

Chain SS

eS17

Chain VV

uS10

Chain ee

eS29