J3_6D90_041
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6D90_041 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1531
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6D90|1|5|A|2598
6D90|1|5|G|2599
6D90|1|5|A|2600
6D90|1|5|A|2601
6D90|1|5|G|2602
*
6D90|1|5|C|2737
6D90|1|5|C|2738
*
6D90|1|5|G|2742
6D90|1|5|A|2743
6D90|1|5|A|2744
6D90|1|5|A|2745
6D90|1|5|A|2746
6D90|1|5|U|2747
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain g
- eL34
- Chain p
- eL43
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