J3_6D90_043
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 6D90|1|5|C|4337, 6D90|1|5|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6D90_043 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.1261
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6D90|1|5|G|4228
6D90|1|5|U|4229
6D90|1|5|C|4230
*
6D90|1|5|G|4331
6D90|1|5|C|4332
6D90|1|5|C|4333
6D90|1|5|U|4334
6D90|1|5|C|4335
6D90|1|5|A|4336
6D90|1|5|C|4337
6D90|1|5|G|4338
6D90|1|5|A|4339
6D90|1|5|U|4340
6D90|1|5|C|4341
6D90|1|5|C|4342
*
6D90|1|5|G|4370
6D90|1|5|G|4371
6D90|1|5|U|4372
6D90|1|5|G|4373
6D90|1|5|U|4374
6D90|1|5|C|4375
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Q
- rL18
- Chain T
- eL21
- Chain a
- uL15
- Chain o
- eL42
Coloring options: