3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGG*UAAGA*UA
Length
10 nucleotides
Bulged bases
6D9J|1|2|G|921
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6D9J_002 not in the Motif Atlas
Geometric match to J3_4V88_080
Geometric discrepancy: 0.2662
The information below is about J3_4V88_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.3
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
6

Unit IDs

6D9J|1|2|U|682
6D9J|1|2|G|683
6D9J|1|2|G|684
*
6D9J|1|2|U|918
6D9J|1|2|A|919
6D9J|1|2|A|920
6D9J|1|2|G|921
6D9J|1|2|A|922
*
6D9J|1|2|U|1022
6D9J|1|2|A|1023

Current chains

Chain 2
18S rRNA

Nearby chains

Chain II
eS7
Chain MM
uS17
Chain OO
uS15
Chain XX
uS8
Chain YY
uS12
Chain cc
eS27

Coloring options:


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