J3_6D9J_010

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6D9J_010 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.3357

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6D9J|1|2|U|1350
6D9J|1|2|G|1351
*
6D9J|1|2|U|1360
6D9J|1|2|G|1361
6D9J|1|2|U|1362
6D9J|1|2|C|1363
*
6D9J|1|2|G|1375
6D9J|1|2|A|1376
6D9J|1|2|U|1377
6D9J|1|2|A|1378
6D9J|1|2|A|1379

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BB

uS2

Chain DD

uS5

Chain SS

eS17