3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAGUG*CAA*UCUG
Length
14 nucleotides
Bulged bases
6D9J|1|5|A|2396
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6D9J_018 not in the Motif Atlas
Homologous match to J3_8C3A_006
Geometric discrepancy: 0.1451
The information below is about J3_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_10154.2
Basepair signature
cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
Number of instances in this motif group
3

Unit IDs

6D9J|1|5|C|2393
6D9J|1|5|G|2394
6D9J|1|5|A|2395
6D9J|1|5|A|2396
6D9J|1|5|G|2397
6D9J|1|5|U|2398
6D9J|1|5|G|2399
*
6D9J|1|5|C|2805
6D9J|1|5|A|2806
6D9J|1|5|A|2807
*
6D9J|1|5|U|2819
6D9J|1|5|C|2820
6D9J|1|5|U|2821
6D9J|1|5|G|2822

Current chains

Chain 5
28S rRNA

Nearby chains

Chain R
eL19
Chain g
eL34

Coloring options:


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