J3_6D9J_022
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6D9J|1|5|A|4280
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6D9J_022 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1738
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6D9J|1|5|C|4241
6D9J|1|5|U|4242
6D9J|1|5|C|4243
*
6D9J|1|5|G|4267
6D9J|1|5|A|4268
6D9J|1|5|G|4269
*
6D9J|1|5|C|4278
6D9J|1|5|A|4279
6D9J|1|5|A|4280
6D9J|1|5|A|4281
6D9J|1|5|A|4282
6D9J|1|5|G|4283
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- uL18
- Chain J
- uL11
- Chain T
- eL21
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