J3_6DDD_015
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6DDD|1|1|U|34, 6DDD|1|1|U|494, 6DDD|1|1|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDD_015 not in the Motif Atlas
- Homologous match to J3_4WF9_012
- Geometric discrepancy: 0.1387
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6DDD|1|1|C|32
6DDD|1|1|U|33
6DDD|1|1|U|34
6DDD|1|1|G|35
*
6DDD|1|1|C|491
6DDD|1|1|G|492
6DDD|1|1|A|493
6DDD|1|1|U|494
6DDD|1|1|A|495
6DDD|1|1|G|496
6DDD|1|1|U|497
6DDD|1|1|G|498
6DDD|1|1|A|499
6DDD|1|1|A|500
6DDD|1|1|C|501
6DDD|1|1|C|502
6DDD|1|1|A|503
6DDD|1|1|G|504
6DDD|1|1|U|505
6DDD|1|1|A|506
6DDD|1|1|C|507
*
6DDD|1|1|G|514
6DDD|1|1|G|515
6DDD|1|1|A|516
6DDD|1|1|A|517
6DDD|1|1|A|518
6DDD|1|1|G|519
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L20
- Chain F
- 50S ribosomal protein L23
- Chain P
- 50S ribosomal protein L34
- Chain S
- 50S ribosomal protein L4
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