3D structure

PDB id
6DDD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6DDD|1|1|U|34, 6DDD|1|1|U|494, 6DDD|1|1|C|502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6DDD_015 not in the Motif Atlas
Homologous match to J3_4WF9_012
Geometric discrepancy: 0.1387
The information below is about J3_4WF9_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6DDD|1|1|C|32
6DDD|1|1|U|33
6DDD|1|1|U|34
6DDD|1|1|G|35
*
6DDD|1|1|C|491
6DDD|1|1|G|492
6DDD|1|1|A|493
6DDD|1|1|U|494
6DDD|1|1|A|495
6DDD|1|1|G|496
6DDD|1|1|U|497
6DDD|1|1|G|498
6DDD|1|1|A|499
6DDD|1|1|A|500
6DDD|1|1|C|501
6DDD|1|1|C|502
6DDD|1|1|A|503
6DDD|1|1|G|504
6DDD|1|1|U|505
6DDD|1|1|A|506
6DDD|1|1|C|507
*
6DDD|1|1|G|514
6DDD|1|1|G|515
6DDD|1|1|A|516
6DDD|1|1|A|517
6DDD|1|1|A|518
6DDD|1|1|G|519

Current chains

Chain 1
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L20
Chain F
50S ribosomal protein L23
Chain P
50S ribosomal protein L34
Chain S
50S ribosomal protein L4

Coloring options:


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