J3_6DDG_011
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GUUAAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 6DDG|1|1|U|2853, 6DDG|1|1|A|2855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDG_011 not in the Motif Atlas
- Homologous match to J3_7A0S_013
- Geometric discrepancy: 0.1685
- The information below is about J3_7A0S_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6DDG|1|1|C|2834
6DDG|1|1|C|2835
*
6DDG|1|1|G|2851
6DDG|1|1|U|2852
6DDG|1|1|U|2853
6DDG|1|1|A|2854
6DDG|1|1|A|2855
6DDG|1|1|U|2856
*
6DDG|1|1|A|2902
6DDG|1|1|A|2903
6DDG|1|1|U|2904
6DDG|1|1|C|2905
6DDG|1|1|G|2906
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L32
- Chain Z
- 50S ribosomal protein L17
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