J3_6DDG_012
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6DDG|1|1|U|549, 6DDG|1|1|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDG_012 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2006
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6DDG|1|1|G|30
6DDG|1|1|C|31
*
6DDG|1|1|G|520
6DDG|1|1|U|521
6DDG|1|1|G|522
6DDG|1|1|A|523
6DDG|1|1|A|524
6DDG|1|1|A|525
6DDG|1|1|A|526
6DDG|1|1|G|527
6DDG|1|1|C|528
6DDG|1|1|A|529
6DDG|1|1|C|530
*
6DDG|1|1|G|541
6DDG|1|1|A|542
6DDG|1|1|G|543
6DDG|1|1|U|544
6DDG|1|1|G|545
6DDG|1|1|A|546
6DDG|1|1|A|547
6DDG|1|1|A|548
6DDG|1|1|U|549
6DDG|1|1|A|550
6DDG|1|1|G|551
6DDG|1|1|A|552
6DDG|1|1|A|553
6DDG|1|1|C|554
6DDG|1|1|C|555
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L20
- Chain E
- 50S ribosomal protein L22
- Chain G
- 50S ribosomal protein L24
Coloring options: