J3_6DDG_013
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6DDG|1|1|U|34, 6DDG|1|1|U|494, 6DDG|1|1|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDG_013 not in the Motif Atlas
- Homologous match to J3_4WF9_012
- Geometric discrepancy: 0.1443
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6DDG|1|1|C|32
6DDG|1|1|U|33
6DDG|1|1|U|34
6DDG|1|1|G|35
*
6DDG|1|1|C|491
6DDG|1|1|G|492
6DDG|1|1|A|493
6DDG|1|1|U|494
6DDG|1|1|A|495
6DDG|1|1|G|496
6DDG|1|1|U|497
6DDG|1|1|G|498
6DDG|1|1|A|499
6DDG|1|1|A|500
6DDG|1|1|C|501
6DDG|1|1|C|502
6DDG|1|1|A|503
6DDG|1|1|G|504
6DDG|1|1|U|505
6DDG|1|1|A|506
6DDG|1|1|C|507
*
6DDG|1|1|G|514
6DDG|1|1|G|515
6DDG|1|1|A|516
6DDG|1|1|A|517
6DDG|1|1|A|518
6DDG|1|1|G|519
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L20
- Chain F
- 50S ribosomal protein L23
- Chain P
- 50S ribosomal protein L34
- Chain S
- 50S ribosomal protein L4
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