J3_6DNC_002

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DNC_002 not in the Motif Atlas

Geometric match to J3_4LFB_011

Geometric discrepancy: 0.1409

The information below is about J3_4LFB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6DNC|1|A|C|586
6DNC|1|A|G|587
6DNC|1|A|G|588
*
6DNC|1|A|C|651
6DNC|1|A|U|652
6DNC|1|A|U|653
6DNC|1|A|G|654
*
6DNC|1|A|C|754
6DNC|1|A|G|755

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S15

Chain DB

30S ribosomal protein S17

Chain UA

30S ribosomal protein S8

Chain YA

30S ribosomal protein S12