J3_6DNC_009
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DNC_009 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.119
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6DNC|1|A|C|1063
6DNC|1|A|G|1064
6DNC|1|A|U|1065
6DNC|1|A|C|1066
6DNC|1|A|A|1067
6DNC|1|A|G|1068
*
6DNC|1|A|C|1107
6DNC|1|A|G|1108
6DNC|1|A|C|1109
6DNC|1|A|A|1110
6DNC|1|A|A|1111
6DNC|1|A|C|1112
6DNC|1|A|C|1113
*
6DNC|1|A|G|1187
6DNC|1|A|A|1188
6DNC|1|A|U|1189
6DNC|1|A|G|1190
6DNC|1|A|A|1191
6DNC|1|A|C|1192
6DNC|1|A|G|1193
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain AB
- 30S ribosomal protein S14
- Chain OA
- 30S ribosomal protein S2
- Chain PA
- 30S ribosomal protein S3
- Chain RA
- 30S ribosomal protein S5
- Chain VA
- 30S ribosomal protein S9
- Chain WA
- 30S ribosomal protein S10
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