J3_6DNC_015
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 6DNC|1|B|U|686, 6DNC|1|B|A|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DNC_015 not in the Motif Atlas
- Homologous match to J3_7RQB_004
- Geometric discrepancy: 0.357
- The information below is about J3_7RQB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6DNC|1|B|U|683
6DNC|1|B|G|684
6DNC|1|B|A|685
6DNC|1|B|U|686
6DNC|1|B|C|687
6DNC|1|B|U|688
6DNC|1|B|A|689
*
6DNC|1|B|U|773
6DNC|1|B|G|774
6DNC|1|B|G|775
*
6DNC|1|B|C|791
6DNC|1|B|A|792
6DNC|1|B|A|793
6DNC|1|B|A|794
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
- Chain HA
- 50S ribosomal protein L34
Coloring options: