J3_6DNC_017
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGA*UUUAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DNC_017 not in the Motif Atlas
- Homologous match to J3_5J7L_040
- Geometric discrepancy: 0.2756
- The information below is about J3_5J7L_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.5
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6DNC|1|B|G|1055
6DNC|1|B|G|1056
6DNC|1|B|A|1057
*
6DNC|1|B|U|1081
6DNC|1|B|U|1082
6DNC|1|B|U|1083
6DNC|1|B|A|1084
6DNC|1|B|A|1085
6DNC|1|B|A|1086
6DNC|1|B|G|1087
*
6DNC|1|B|C|1102
6DNC|1|B|A|1103
6DNC|1|B|C|1104
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain JA
- 50S ribosomal protein L36
- Chain L
- 50S ribosomal protein L10
- Chain M
- 50S ribosomal protein L11
Coloring options: