J3_6DNC_032
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6DNC|1|B|U|34, 6DNC|1|B|U|448, 6DNC|1|B|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DNC_032 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1519
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6DNC|1|B|C|32
6DNC|1|B|C|33
6DNC|1|B|U|34
6DNC|1|B|G|35
*
6DNC|1|B|C|445
6DNC|1|B|G|446
6DNC|1|B|A|447
6DNC|1|B|U|448
6DNC|1|B|A|449
6DNC|1|B|G|450
6DNC|1|B|U|451
6DNC|1|B|G|452
6DNC|1|B|A|453
6DNC|1|B|A|454
6DNC|1|B|C|455
6DNC|1|B|C|456
6DNC|1|B|A|457
6DNC|1|B|G|458
6DNC|1|B|U|459
6DNC|1|B|A|460
6DNC|1|B|C|461
*
6DNC|1|B|G|468
6DNC|1|B|G|469
6DNC|1|B|A|470
6DNC|1|B|A|471
6DNC|1|B|A|472
6DNC|1|B|G|473
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L4
- Chain HA
- 50S ribosomal protein L34
- Chain U
- 50S ribosomal protein L20
- Chain X
- 50S ribosomal protein L23
Coloring options: