J3_6DNC_038

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

6DNC|1|A|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DNC_038 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1368

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6DNC|1|A|U|1073
6DNC|1|A|G|1074
*
6DNC|1|A|U|1083
6DNC|1|A|G|1084
6DNC|1|A|U|1085
6DNC|1|A|U|1086
*
6DNC|1|A|G|1099
6DNC|1|A|C|1100
6DNC|1|A|A|1101
6DNC|1|A|A|1102

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain HB

30S ribosomal protein S21

Chain OA

30S ribosomal protein S2

Chain RA

30S ribosomal protein S5