J3_6DTI_006
3D structure
- PDB id
- 6DTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 6DTI|1|A|A|953, 6DTI|1|A|G|954, 6DTI|1|A|A|956
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DTI_006 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0665
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6DTI|1|A|U|933
6DTI|1|A|U|934
6DTI|1|A|U|935
6DTI|1|A|A|936
6DTI|1|A|A|937
6DTI|1|A|U|938
6DTI|1|A|U|939
6DTI|1|A|C|940
*
6DTI|1|A|G|951
6DTI|1|A|A|952
6DTI|1|A|A|953
6DTI|1|A|G|954
6DTI|1|A|A|955
6DTI|1|A|A|956
6DTI|1|A|C|957
6DTI|1|A|C|958
6DTI|1|A|U|959
6DTI|1|A|U|960
6DTI|1|A|A|961
6DTI|1|A|C|962
*
6DTI|1|A|G|1198
6DTI|1|A|G|1199
6DTI|1|A|C|1200
6DTI|1|A|G|1201
6DTI|1|A|A|1202
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14 type Z
- Chain S
- 30S ribosomal protein S19
Coloring options: