J3_6DTI_007
3D structure
- PDB id
- 6DTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DTI_007 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.1226
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6DTI|1|A|C|968
6DTI|1|A|U|969
6DTI|1|A|U|970
6DTI|1|A|G|971
*
6DTI|1|A|C|1023
6DTI|1|A|A|1024
6DTI|1|A|G|1025
*
6DTI|1|A|C|1187
6DTI|1|A|U|1188
6DTI|1|A|U|1189
6DTI|1|A|A|1190
6DTI|1|A|C|1191
6DTI|1|A|G|1192
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S14 type Z
Coloring options: