3D structure

PDB id
6DTI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6DTI_007 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.1226
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

6DTI|1|A|C|968
6DTI|1|A|U|969
6DTI|1|A|U|970
6DTI|1|A|G|971
*
6DTI|1|A|C|1023
6DTI|1|A|A|1024
6DTI|1|A|G|1025
*
6DTI|1|A|C|1187
6DTI|1|A|U|1188
6DTI|1|A|U|1189
6DTI|1|A|A|1190
6DTI|1|A|C|1191
6DTI|1|A|G|1192

Current chains

Chain A
16s rRNA

Nearby chains

Chain N
30S ribosomal protein S14 type Z

Coloring options:


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