J3_6DTI_008
3D structure
- PDB id
- 6DTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DTI_008 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0765
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6DTI|1|A|C|1041
6DTI|1|A|G|1042
6DTI|1|A|U|1043
6DTI|1|A|C|1044
6DTI|1|A|A|1045
6DTI|1|A|G|1046
*
6DTI|1|A|C|1085
6DTI|1|A|G|1086
6DTI|1|A|C|1087
6DTI|1|A|A|1088
6DTI|1|A|A|1089
6DTI|1|A|C|1090
6DTI|1|A|C|1091
*
6DTI|1|A|G|1164
6DTI|1|A|A|1165
6DTI|1|A|C|1166
6DTI|1|A|G|1167
6DTI|1|A|A|1168
6DTI|1|A|C|1169
6DTI|1|A|G|1170
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain C
- 30S ribosomal protein S3
- Chain E
- 30S ribosomal protein S5
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
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