3D structure

PDB id
6DTI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
UG*UGUUG*CGCAA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6DTI_009 not in the Motif Atlas
Homologous match to J3_5J7L_009
Geometric discrepancy: 0.0993
The information below is about J3_5J7L_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.3
Basepair signature
cWW-cWW-tSS-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

6DTI|1|A|U|1051
6DTI|1|A|G|1052
*
6DTI|1|A|U|1061
6DTI|1|A|G|1062
6DTI|1|A|U|1063
6DTI|1|A|U|1064
6DTI|1|A|G|1065
*
6DTI|1|A|C|1076
6DTI|1|A|G|1077
6DTI|1|A|C|1078
6DTI|1|A|A|1079
6DTI|1|A|A|1080

Current chains

Chain A
16s rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain E
30S ribosomal protein S5

Coloring options:


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