J3_6DTI_017
3D structure
- PDB id
- 6DTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 6DTI|1|A|A|1160
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DTI_017 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1109
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6DTI|1|A|C|1094
6DTI|1|A|G|1095
6DTI|1|A|C|1096
*
6DTI|1|A|G|1133
6DTI|1|A|G|1134
6DTI|1|A|A|1135
6DTI|1|A|C|1136
6DTI|1|A|U|1137
6DTI|1|A|G|1138
6DTI|1|A|C|1139
*
6DTI|1|A|G|1152
6DTI|1|A|A|1153
6DTI|1|A|G|1154
6DTI|1|A|G|1155
6DTI|1|A|A|1156
6DTI|1|A|A|1157
6DTI|1|A|G|1158
6DTI|1|A|G|1159
6DTI|1|A|A|1160
6DTI|1|A|G|1161
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain N
- 30S ribosomal protein S14 type Z
Coloring options: