J3_6DZI_026

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CAAUG*CUCAGUUC*GUCG

Length

17 nucleotides

Bulged bases

6DZI|1|h|U|1221, 6DZI|1|h|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZI_026 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1901

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6DZI|1|h|C|1218
6DZI|1|h|A|1219
6DZI|1|h|A|1220
6DZI|1|h|U|1221
6DZI|1|h|G|1222
*
6DZI|1|h|C|1278
6DZI|1|h|U|1279
6DZI|1|h|C|1280
6DZI|1|h|A|1281
6DZI|1|h|G|1282
6DZI|1|h|U|1283
6DZI|1|h|U|1284
6DZI|1|h|C|1285
*
6DZI|1|h|G|1316
6DZI|1|h|U|1317
6DZI|1|h|C|1318
6DZI|1|h|G|1319

Current chains

Chain h

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S7

Chain v

30S ribosomal protein S13