J3_6DZI_037

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GCUUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6DZI|1|h|U|52, 6DZI|1|h|A|54, 6DZI|1|h|A|55

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZI_037 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1965

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6DZI|1|h|G|50
6DZI|1|h|C|51
6DZI|1|h|U|52
6DZI|1|h|U|53
6DZI|1|h|A|54
6DZI|1|h|A|55
6DZI|1|h|C|56
*
6DZI|1|h|G|359
6DZI|1|h|G|360
6DZI|1|h|G|361
6DZI|1|h|G|362
6DZI|1|h|A|363
6DZI|1|h|A|364
6DZI|1|h|U|365
6DZI|1|h|A|366
6DZI|1|h|U|367
*
6DZI|1|h|A|393
6DZI|1|h|G|394
6DZI|1|h|C|395

Current chains

Chain h

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S12

Chain z

30S ribosomal protein S16