J3_6DZP_021

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

6DZP|1|A|A|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZP_021 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1703

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6DZP|1|A|C|1413
6DZP|1|A|G|1414
6DZP|1|A|A|1415
6DZP|1|A|A|1416
6DZP|1|A|A|1417
6DZP|1|A|G|1418
*
6DZP|1|A|C|1843
6DZP|1|A|A|1844
6DZP|1|A|G|1845
*
6DZP|1|A|U|1857
6DZP|1|A|A|1858
6DZP|1|A|A|1859
6DZP|1|A|G|1860

Current chains

Chain A

23S rRNA

Nearby chains