J3_6EK0_007
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAG*C(B9H)AUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 6EK0|1|L5|U|2788, 6EK0|1|L5|A|2789
- QA status
- Modified nucleotides: B9H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6EK0_007 not in the Motif Atlas
- Homologous match to J3_8CRE_014
- Geometric discrepancy: 0.0985
- The information below is about J3_8CRE_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
6EK0|1|L5|G|2402
6EK0|1|L5|A|2403
6EK0|1|L5|A|2404
6EK0|1|L5|G|2405
*
6EK0|1|L5|C|2785
6EK0|1|L5|B9H|2786
6EK0|1|L5|A|2787
6EK0|1|L5|U|2788
6EK0|1|L5|A|2789
6EK0|1|L5|U|2790
6EK0|1|L5|C|2791
*
6EK0|1|L5|G|2800
6EK0|1|L5|U|2801
6EK0|1|L5|C|2802
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain Lg
- 60S ribosomal protein L34
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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