J3_6EK0_010

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6EK0_010 not in the Motif Atlas

Homologous match to J3_8P9A_087

Geometric discrepancy: 0.2272

The information below is about J3_8P9A_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.2

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6EK0|1|L5|U|2575
6EK0|1|L5|G|2576
*
6EK0|1|L5|C|2585
6EK0|1|L5|G|2586
6EK0|1|L5|A|2587
6EK0|1|L5|C|2588
6EK0|1|L5|C|2589
*
6EK0|1|L5|G|2756
6EK0|1|L5|A|2757

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34