J3_6EK0_023
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- C(B8Q)AG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- 6EK0|1|S2|A|1679
- QA status
- Modified nucleotides: B8Q, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6EK0_023 not in the Motif Atlas
- Homologous match to J3_8CRE_078
- Geometric discrepancy: 0.1428
- The information below is about J3_8CRE_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.2
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
6EK0|1|S2|C|1218
6EK0|1|S2|B8Q|1219
6EK0|1|S2|A|1220
6EK0|1|S2|G|1221
*
6EK0|1|S2|C|1645
6EK0|1|S2|C|1646
6EK0|1|S2|A|1647
6EK0|1|S2|G|1648
6EK0|1|S2|U|1649
6EK0|1|S2|A|1650
6EK0|1|S2|A|1651
*
6EK0|1|S2|U|1673
6EK0|1|S2|G|1674
6EK0|1|S2|A|1675
6EK0|1|S2|U|1676
6EK0|1|S2|U|1677
6EK0|1|S2|A2M|1678
6EK0|1|S2|A|1679
6EK0|1|S2|G|1680
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain S6
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain Sc
- 40S ribosomal protein S28
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