J3_6EK0_036

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6EK0_036 not in the Motif Atlas

Homologous match to J3_8CRE_018

Geometric discrepancy: 0.1513

The information below is about J3_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6EK0|1|L5|A|2598
6EK0|1|L5|G|2599
6EK0|1|L5|A|2600
6EK0|1|L5|A|2601
6EK0|1|L5|G|2602
*
6EK0|1|L5|C|2737
6EK0|1|L5|C|2738
*
6EK0|1|L5|G|2742
6EK0|1|L5|A|2743
6EK0|1|L5|A|2744
6EK0|1|L5|A|2745
6EK0|1|L5|A|2746
6EK0|1|L5|U|2747

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a