J3_6EML_011

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAC*GGAC*GUUU

Length

11 nucleotides

Bulged bases

6EML|1|2|U|1413, 6EML|1|2|U|1414

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6EML_011 not in the Motif Atlas

Homologous match to J3_4V88_040

Geometric discrepancy: 0.272

The information below is about J3_4V88_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.2

Basepair signature

cWW-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6EML|1|2|A|1336
6EML|1|2|A|1337
6EML|1|2|C|1338
*
6EML|1|2|G|1386
6EML|1|2|G|1387
6EML|1|2|A|1388
6EML|1|2|C|1389
*
6EML|1|2|G|1412
6EML|1|2|U|1413
6EML|1|2|U|1414
6EML|1|2|U|1415

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S5

Chain C

40S ribosomal protein S17-A

Chain F

40S ribosomal protein S16-A