J3_6ENF_021

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ENF_021 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1285

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6ENF|1|a|C|990
6ENF|1|a|U|991
6ENF|1|a|U|992
6ENF|1|a|G|993
*
6ENF|1|a|C|1045
6ENF|1|a|A|1046
6ENF|1|a|G|1047
*
6ENF|1|a|C|1210
6ENF|1|a|U|1211
6ENF|1|a|U|1212
6ENF|1|a|A|1213
6ENF|1|a|C|1214
6ENF|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14