J3_6ERI_008

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAG*CCGAAAC*GUAG

Length

16 nucleotides

Bulged bases

6ERI|1|AA|G|1643, 6ERI|1|AA|A|1645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.3182

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6ERI|1|AA|C|1326
6ERI|1|AA|U|1327
6ERI|1|AA|A|1328
6ERI|1|AA|A|1329
6ERI|1|AA|G|1330
*
6ERI|1|AA|C|1641
6ERI|1|AA|C|1642
6ERI|1|AA|G|1643
6ERI|1|AA|A|1644
6ERI|1|AA|A|1645
6ERI|1|AA|A|1646
6ERI|1|AA|C|1647
*
6ERI|1|AA|G|1656
6ERI|1|AA|U|1657
6ERI|1|AA|A|1658
6ERI|1|AA|G|1659

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Ac

50S ribosomal protein L34, chloroplastic

Chain Aw

50S ribosomal protein 5 alpha, chloroplastic