J3_6ERI_010

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUG*CUAAC*GGACAUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_010 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.142

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6ERI|1|AA|A|2104
6ERI|1|AA|U|2105
6ERI|1|AA|U|2106
6ERI|1|AA|G|2107
*
6ERI|1|AA|C|2210
6ERI|1|AA|U|2211
6ERI|1|AA|A|2212
6ERI|1|AA|A|2213
6ERI|1|AA|C|2214
*
6ERI|1|AA|G|2240
6ERI|1|AA|G|2241
6ERI|1|AA|A|2242
6ERI|1|AA|C|2243
6ERI|1|AA|A|2244
6ERI|1|AA|U|2245
6ERI|1|AA|U|2246

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain AH

50S ribosomal protein L9, chloroplastic

Chain AX

50S ribosomal protein L28, chloroplastic