J3_6ERI_012

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6ERI|1|AA|C|2535, 6ERI|1|AA|A|2536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_012 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1109

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6ERI|1|AA|C|2534
6ERI|1|AA|C|2535
6ERI|1|AA|A|2536
6ERI|1|AA|C|2537
*
6ERI|1|AA|G|2562
6ERI|1|AA|U|2563
6ERI|1|AA|U|2564
*
6ERI|1|AA|A|2578
6ERI|1|AA|U|2579
6ERI|1|AA|U|2580
6ERI|1|AA|A|2581
6ERI|1|AA|A|2582
6ERI|1|AA|A|2583
6ERI|1|AA|G|2584

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L14, chloroplastic