J3_6ERI_020
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUUCG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ERI_020 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0993
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ERI|1|BA|C|886
6ERI|1|BA|A|887
6ERI|1|BA|A|888
6ERI|1|BA|G|889
*
6ERI|1|BA|C|1293
6ERI|1|BA|U|1294
6ERI|1|BA|A|1295
6ERI|1|BA|G|1296
6ERI|1|BA|U|1297
6ERI|1|BA|A|1298
6ERI|1|BA|A|1299
*
6ERI|1|BA|U|1322
6ERI|1|BA|G|1323
6ERI|1|BA|A|1324
6ERI|1|BA|A|1325
6ERI|1|BA|U|1326
6ERI|1|BA|U|1327
6ERI|1|BA|C|1328
6ERI|1|BA|G|1329
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BG
- 30S ribosomal protein S7, chloroplastic
- Chain BI
- 30S ribosomal protein S9, chloroplastic
Coloring options: