J3_6ERI_025
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ERI_025 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.1064
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6ERI|1|BA|C|1013
6ERI|1|BA|G|1014
6ERI|1|BA|U|1015
6ERI|1|BA|C|1016
6ERI|1|BA|A|1017
6ERI|1|BA|G|1018
*
6ERI|1|BA|C|1057
6ERI|1|BA|G|1058
6ERI|1|BA|C|1059
6ERI|1|BA|A|1060
6ERI|1|BA|A|1061
6ERI|1|BA|C|1062
6ERI|1|BA|C|1063
*
6ERI|1|BA|G|1136
6ERI|1|BA|A|1137
6ERI|1|BA|U|1138
6ERI|1|BA|G|1139
6ERI|1|BA|A|1140
6ERI|1|BA|C|1141
6ERI|1|BA|G|1142
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BB
- 30S ribosomal protein S2, chloroplastic
- Chain BC
- 30S ribosomal protein S3, chloroplastic
- Chain BE
- 30S ribosomal protein S5, chloroplastic
- Chain BI
- 30S ribosomal protein S9, chloroplastic
- Chain BJ
- 30S ribosomal protein S10 alpha, chloroplastic
- Chain BN
- 30S ribosomal protein S14, chloroplastic
Coloring options: