J3_6ERI_026

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_026 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.084

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6ERI|1|BA|U|1023
6ERI|1|BA|G|1024
*
6ERI|1|BA|U|1033
6ERI|1|BA|G|1034
6ERI|1|BA|U|1035
6ERI|1|BA|U|1036
6ERI|1|BA|G|1037
*
6ERI|1|BA|C|1048
6ERI|1|BA|G|1049
6ERI|1|BA|C|1050
6ERI|1|BA|A|1051
6ERI|1|BA|A|1052

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S2, chloroplastic

Chain BE

30S ribosomal protein S5, chloroplastic