J3_6ERI_033

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_033 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1149

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6ERI|1|AA|G|1445
6ERI|1|AA|G|1446
6ERI|1|AA|G|1447
6ERI|1|AA|A|1448
6ERI|1|AA|C|1449
6ERI|1|AA|G|1450
*
6ERI|1|AA|C|1598
6ERI|1|AA|C|1599
*
6ERI|1|AA|G|1602
6ERI|1|AA|A|1603
6ERI|1|AA|A|1604
6ERI|1|AA|A|1605
6ERI|1|AA|A|1606
6ERI|1|AA|G|1607
6ERI|1|AA|C|1608

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain Aw

50S ribosomal protein 5 alpha, chloroplastic