J3_6ERI_035

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUUAAC*GGGGAAUUU*AGC

Length

19 nucleotides

Bulged bases

6ERI|1|BA|U|50, 6ERI|1|BA|A|52, 6ERI|1|BA|A|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ERI_035 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1124

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.2

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ERI|1|BA|G|48
6ERI|1|BA|C|49
6ERI|1|BA|U|50
6ERI|1|BA|U|51
6ERI|1|BA|A|52
6ERI|1|BA|A|53
6ERI|1|BA|C|54
*
6ERI|1|BA|G|331
6ERI|1|BA|G|332
6ERI|1|BA|G|333
6ERI|1|BA|G|334
6ERI|1|BA|A|335
6ERI|1|BA|A|336
6ERI|1|BA|U|337
6ERI|1|BA|U|338
6ERI|1|BA|U|339
*
6ERI|1|BA|A|365
6ERI|1|BA|G|366
6ERI|1|BA|C|367

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BL

30S ribosomal protein S12, chloroplastic

Chain BP

30S ribosomal protein S16, chloroplastic