J3_6FEC_005

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6FEC|1|A|C|1134, 6FEC|1|A|A|1146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FEC|1|A|C|1090
6FEC|1|A|U|1091
6FEC|1|A|G|1092
*
6FEC|1|A|U|1132
6FEC|1|A|U|1133
6FEC|1|A|C|1134
6FEC|1|A|C|1135
6FEC|1|A|G|1136
*
6FEC|1|A|C|1143
6FEC|1|A|A|1144
6FEC|1|A|A|1145
6FEC|1|A|A|1146
6FEC|1|A|G|1147

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S27

Chain a

40S ribosomal protein S15a

Chain b

40S ribosomal protein S21

Chain f

40S ribosomal protein SA

Chain k

40S ribosomal protein S26