J3_6FEC_010
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FEC_010 not in the Motif Atlas
- Homologous match to J3_8P9A_081
- Geometric discrepancy: 0.2536
- The information below is about J3_8P9A_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.4
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6FEC|1|A|U|1346
6FEC|1|A|G|1347
*
6FEC|1|A|U|1356
6FEC|1|A|G|1357
6FEC|1|A|U|1358
6FEC|1|A|C|1359
*
6FEC|1|A|G|1371
6FEC|1|A|A|1372
6FEC|1|A|U|1373
6FEC|1|A|A|1374
6FEC|1|A|A|1375
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain c
- 40S ribosomal protein S2
- Chain e
- 40S ribosomal protein S17
- Chain f
- 40S ribosomal protein SA
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