J3_6FEC_012
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6FEC|1|A|U|1530
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FEC_012 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.2895
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FEC|1|A|C|1527
6FEC|1|A|A|1528
6FEC|1|A|C|1529
6FEC|1|A|U|1530
6FEC|1|A|G|1531
*
6FEC|1|A|C|1592
6FEC|1|A|G|1593
6FEC|1|A|U|1594
6FEC|1|A|G|1595
6FEC|1|A|A|1596
6FEC|1|A|U|1597
6FEC|1|A|G|1598
6FEC|1|A|G|1599
*
6FEC|1|A|C|1630
6FEC|1|A|G|1631
6FEC|1|A|A|1632
6FEC|1|A|G|1633
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein S18
- Chain R
- 40S ribosomal protein S19
- Chain U
- 40S ribosomal protein S5
- Chain W
- 40S ribosomal protein S25
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