J3_6FEC_013

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6FEC|1|A|A|45, 6FEC|1|A|A|46

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FEC_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.2173

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6FEC|1|A|A|40
6FEC|1|A|G|41
6FEC|1|A|A|42
6FEC|1|A|U|43
6FEC|1|A|U|44
6FEC|1|A|A|45
6FEC|1|A|A|46
6FEC|1|A|G|47
*
6FEC|1|A|C|469
6FEC|1|A|G|470
6FEC|1|A|C|471
6FEC|1|A|G|472
6FEC|1|A|C|473
6FEC|1|A|A|474
6FEC|1|A|A|475
6FEC|1|A|A|476
6FEC|1|A|U|477
*
6FEC|1|A|A|502
6FEC|1|A|G|503
6FEC|1|A|U|504

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S23