J3_6FEC_020
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 6FEC|1|A|G|917
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FEC_020 not in the Motif Atlas
- Homologous match to J3_8CRE_074
- Geometric discrepancy: 0.2944
- The information below is about J3_8CRE_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FEC|1|A|U|672
6FEC|1|A|G|673
6FEC|1|A|G|674
*
6FEC|1|A|U|914
6FEC|1|A|A|915
6FEC|1|A|A|916
6FEC|1|A|G|917
6FEC|1|A|A|918
6FEC|1|A|G|919
*
6FEC|1|A|C|1015
6FEC|1|A|A|1016
6FEC|1|A|U|1017
6FEC|1|A|U|1018
6FEC|1|A|A|1019
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S11
- Chain Q
- 40S ribosomal protein S23
- Chain X
- 40S ribosomal protein S7
- Chain Y
- 40S ribosomal protein S27
- Chain Z
- 40S ribosomal protein S13
- Chain a
- 40S ribosomal protein S15a
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