J3_6FKR_066

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6FKR|1|2A|U|504, 6FKR|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FKR_066 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0628

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6FKR|1|2A|G|30
6FKR|1|2A|C|31
*
6FKR|1|2A|G|474
6FKR|1|2A|U|475
6FKR|1|2A|G|476
6FKR|1|2A|A|477
6FKR|1|2A|A|478
6FKR|1|2A|A|479
6FKR|1|2A|A|480
6FKR|1|2A|G|481
6FKR|1|2A|A|482
6FKR|1|2A|A|483
6FKR|1|2A|C|484
*
6FKR|1|2A|G|496
6FKR|1|2A|A|497
6FKR|1|2A|G|498
6FKR|1|2A|U|499
6FKR|1|2A|G|500
6FKR|1|2A|A|501
6FKR|1|2A|A|502
6FKR|1|2A|A|503
6FKR|1|2A|U|504
6FKR|1|2A|A|505
6FKR|1|2A|G|506
6FKR|1|2A|A|507
6FKR|1|2A|G|508
6FKR|1|2A|C|509
6FKR|1|2A|C|510

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24