J3_6FRK_009

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FRK_009 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.271

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6FRK|1|5|G|1969
6FRK|1|5|A|1970
6FRK|1|5|C|1971
*
6FRK|1|5|G|1995
6FRK|1|5|C|1996
6FRK|1|5|U|1997
6FRK|1|5|A|1998
6FRK|1|5|A|1999
6FRK|1|5|G|2000
6FRK|1|5|G|2001
*
6FRK|1|5|C|2016
6FRK|1|5|A|2017
6FRK|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 4

Ribosomal protein L12

Chain 6

60S acidic ribosomal protein P0