3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
6FRK|1|5|U|354, 6FRK|1|5|A|362, 6FRK|1|8|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6FRK_025 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0753
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6FRK|1|5|C|351
6FRK|1|5|G|352
6FRK|1|5|A|353
6FRK|1|5|U|354
6FRK|1|5|A|355
6FRK|1|5|G|356
6FRK|1|5|U|357
6FRK|1|5|C|358
6FRK|1|5|A|359
6FRK|1|5|A|360
6FRK|1|5|C|361
6FRK|1|5|A|362
6FRK|1|5|A|363
6FRK|1|5|G|364
6FRK|1|5|U|365
6FRK|1|5|A|366
6FRK|1|5|C|367
*
6FRK|1|5|G|374
6FRK|1|5|G|375
6FRK|1|5|A|376
6FRK|1|5|A|377
6FRK|1|5|A|378
6FRK|1|5|G|379
*
6FRK|1|8|C|21
6FRK|1|8|U|22
6FRK|1|8|C|23
6FRK|1|8|G|24

Current chains

Chain 5
28S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain C
Ribosomal protein uL4
Chain Y
Ribosomal protein uL24
Chain j
Ribosomal protein L37
Chain l
Ribosomal protein eL39

Coloring options:


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