J3_6FRK_025
3D structure
- PDB id
- 6FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6FRK|1|5|U|354, 6FRK|1|5|A|362, 6FRK|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FRK_025 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0753
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6FRK|1|5|C|351
6FRK|1|5|G|352
6FRK|1|5|A|353
6FRK|1|5|U|354
6FRK|1|5|A|355
6FRK|1|5|G|356
6FRK|1|5|U|357
6FRK|1|5|C|358
6FRK|1|5|A|359
6FRK|1|5|A|360
6FRK|1|5|C|361
6FRK|1|5|A|362
6FRK|1|5|A|363
6FRK|1|5|G|364
6FRK|1|5|U|365
6FRK|1|5|A|366
6FRK|1|5|C|367
*
6FRK|1|5|G|374
6FRK|1|5|G|375
6FRK|1|5|A|376
6FRK|1|5|A|377
6FRK|1|5|A|378
6FRK|1|5|G|379
*
6FRK|1|8|C|21
6FRK|1|8|U|22
6FRK|1|8|C|23
6FRK|1|8|G|24
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain Y
- Ribosomal protein uL24
- Chain j
- Ribosomal protein L37
- Chain l
- Ribosomal protein eL39
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