J3_6FTG_001

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6FTG|1|u|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTG|1|u|C|112
6FTG|1|u|A|113
6FTG|1|u|G|114
6FTG|1|u|C|115
6FTG|1|u|G|116
*
6FTG|1|u|C|155
6FTG|1|u|G|156
6FTG|1|u|U|157
6FTG|1|u|A|158
6FTG|1|u|C|159
6FTG|1|u|G|160
*
6FTG|1|u|C|275
6FTG|1|u|C|276
6FTG|1|u|G|277
6FTG|1|u|G|278

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain G

eL8

Chain L

eL13

Chain N

Ribosomal protein L15

Chain h

eL29

Chain i

60S ribosomal protein L36