J3_6FTG_009
3D structure
- PDB id
- 6FTG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.1 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FTG_009 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1301
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6FTG|1|u|U|2440
6FTG|1|u|C|2441
6FTG|1|u|G|2442
6FTG|1|u|G|2443
6FTG|1|u|U|2444
6FTG|1|u|C|2445
*
6FTG|1|u|G|2515
6FTG|1|u|G|2516
6FTG|1|u|A|2517
6FTG|1|u|G|2518
6FTG|1|u|U|2519
*
6FTG|1|u|A|2536
6FTG|1|u|A|2537
Current chains
- Chain u
- 28S ribosomal RNA
Nearby chains
- Chain X
- uL23
- Chain g
- eL34
- Chain k
- eL38
- Chain l
- eL39
- Chain w
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: