J3_6FTG_019
3D structure
- PDB id
- 6FTG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.1 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6FTG|1|u|U|354, 6FTG|1|u|A|362, 6FTG|1|w|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FTG_019 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0588
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6FTG|1|u|C|351
6FTG|1|u|G|352
6FTG|1|u|A|353
6FTG|1|u|U|354
6FTG|1|u|A|355
6FTG|1|u|G|356
6FTG|1|u|U|357
6FTG|1|u|C|358
6FTG|1|u|A|359
6FTG|1|u|A|360
6FTG|1|u|C|361
6FTG|1|u|A|362
6FTG|1|u|A|363
6FTG|1|u|G|364
6FTG|1|u|U|365
6FTG|1|u|A|366
6FTG|1|u|C|367
*
6FTG|1|u|G|374
6FTG|1|u|G|375
6FTG|1|u|A|376
6FTG|1|u|A|377
6FTG|1|u|A|378
6FTG|1|u|G|379
*
6FTG|1|w|C|21
6FTG|1|w|U|22
6FTG|1|w|C|23
6FTG|1|w|G|24
Current chains
- Chain u
- 28S ribosomal RNA
- Chain w
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain Y
- Ribosomal protein L26
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
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